- Tomsk ( 485,519 )
- Seversk ( 109,844 )
- Strezhevoy ( 44,784 )
- Kolpashevo ( 27,876 )
- Asino ( 27,070 )
- Mel'nikovo ( 10,157 )
- Kargasok ( 8,572 )
- Togur ( 8,442 )
- Belyy Yar ( 8,245 )
- Aleksandrovskoye, Tomsk Oblast ( 7,999 )
- Kozhevnikovo ( 7,970 )
- Svetlyy, Tomsk Oblast ( 7,536 )
- Bakchar ( 7,195 )
- Zyryanskoye ( 6,285 )
- Parabel' ( 6,227 )
- Molchanovo ( 6,109 )
- Krivosheino ( 6,010 )
- Pervomayskoye, Tomsk Oblast ( 5,817 )
- Samus' ( 5,706 )
- Podgornoye ( 5,024 )
- Tegul'det ( 4,800 )
- Moryakovskiy Zaton ( 4,745 )
- Bogashevo ( 3,773 )
- Krasnyy Yar, Tomsk Oblast ( 3,128 )
- Kedrovyy ( 3,061 )
